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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008259 Open in IMG/M |
| Scaffold ID | Ga0114841_1001156 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15099 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 6 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F036143 | Metagenome | 170 | N |
| F090065 | Metagenome | 108 | N |
| F095452 | Metagenome | 105 | N |
| F104708 | Metagenome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114841_100115616 | F036143 | AGG | MPTSASYQVYGIQEALAEINKVDRLLRRQITKDIQAGAGTRLVTAARSFIPTKTPLSRMVNGNMIKGRDGTGWSRTRVVAGIRTVVGKRGQRARTVTFSNGRTADFKATQYQLLVLQQRDAAGAIWDHAGIRGGGQFVTNLLAEGEHVGPAAAPRALQPAAESVLPAVEDEVGKIVERVMTIVNRNLVQTRTR* |
| Ga0114841_10011562 | F095452 | AGG | MNKLSEADRLELRALFSQLADIQANEILEQLEHQPNQANQLKQDLWGLQARLDDIHADANT* |
| Ga0114841_10011563 | F090065 | N/A | MSKVLVTLDYEELEYCAISGARRNIRAMQKDRKPRQSTVAYEKQHWWQSHVTGVIGEYAVAKSLGEHWLDLENDRGGFDVLSYQVRSTEYPNPNLRIRKGDDENHVFILAQVKNNRVLIHGWATGYEIKMHGTPQYENSIYLTCEQLNDMSLLMHPTIYTAQVTQWERPDYQ* |
| Ga0114841_10011567 | F104708 | GAG | MVNPTDHLDQALANLWANTRPKATDVLIRNLRAHAYSYAMDDPKLCEDLRQAIGRLEHPSTLEPKQQSIIDRLDDIVQELHDLGHTQLGGETDQLLIAIDNALRGKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |