Scaffold Ga0114840_1006709

Overview

Basic Information

• Taxon OID: 3300008258
• Scaffold ID: Ga0114840_1006709
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2013
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Metallibacterium → Metallibacterium scheffleri (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060912	Metagenome / Metatranscriptome	132	Y
F099310	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114840_10067093	F099310	N/A	MSKLLYYKDIIISFLLSFLFGVRVEGEPINLEYGVQVPCSTCTPDAQPDQFSWMREHRVSSLHGVRQHVFL*
Ga0114840_10067095	F060912	N/A	MNKKEIRNAINKAAYELAESMGYEVHDDEGDGTVSFIPHEYTTIDDTITWHRSYHETCVLNWSSDKTKADAAHIDAHMKPIIEQYNNQYIPKRATA*