Scaffold Ga0105350_10031411

Overview

Basic Information

• Taxon OID: 3300008224
• Scaffold ID: Ga0105350_10031411
• Source Dataset Name: Methane-oxidizing microbial communities from mesocosms in the Hudson Canyon - EN1E Hudson Canyon
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2459
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Methane Seep Mesocosm → Methane-Oxidizing Microbial Communities From Mesocosms In The Gulf Of Mexico And Hudson Canyon, Usa

Source Dataset Sampling Location

• Location Name: Hudson Canyon
• Coordinates
  • Lat. (^o): 39.55
  • Long. (^o): -72.4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032825	Metagenome	179	Y
F033963	Metagenome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105350_100314113	F032825	GGAG	MSSLQEILDRAIATNGPDGFMIQQLRNQIMAAKRNQSTRQIYTSGITANHSPKADAQFMASQLLEVSKDD*
Ga0105350_100314114	F033963	GAGG	MIDQHNLSELEEMILLGLREQAVHPKGLNSSHTHGTRYPIGDERNKEPLSTKEHSLNSSKLMRTGIGSRRNWG*