Scaffold Ga0114910_1045164

Overview

Basic Information

• Taxon OID: 3300008220
• Scaffold ID: Ga0114910_1045164
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1429
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.02
  • Long. (^o): 8.37
  • Depth (m): 2641

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012859	Metagenome	276	Y
F016735	Metagenome	245	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114910_10451641	F016735	GGA	VTDLAFYLFALISFVIYFVIYTYYVPLKTQQKIESWLKSEESDETLLASLGVITNQIREQTLVDFEEFMIPQARKAAIDFWNGAMGNAAKELGKTEEGSQLSIMHSMAESLKNESWFVQAAAAKLLPLINKAAANQDNATPKPLKGLGLRK*
Ga0114910_10451643	F012859	N/A	VLDTGFVDEKGEWKGAKSNDKDFIALGTEEGIANTGHILTPSVNPDGTWPLDMTGYCGLFIAIKPTNAGAYKIQAVMGPDSNSFANLSPVNAAAILKGTRGDSGNDFDDLFSDSAETMTADVWNIFSIMSCGLKGQKLLQFKITNNSGGISTIETGFMRLV*