Scaffold Ga0114905_1244714

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114905_1244714

Scaffold Ga0114905_1244714

Overview

Basic Information
Taxon OID	3300008219 Open in IMG/M
Scaffold ID	Ga0114905_1244714 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	566
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	40.24	Long. (^o)	2.3	Alt. (m)		Depth (m)	1876
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F042929	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114905_12447141	F042929	GAG	MMGVWDPGREKTVLSQIKKAMRGPVSGFKAWSGIIGPGILIVFYFFIFFLLLSGCAYFKKEKKDEIIVTDLPPIEFICKKIDCGDEDIDKLVEDEQNTIACIKL
Ga0114905_12447142	F011853	N/A	LIKQHNTLKDKIDEGKTAIANMQAQLNGLVGAVQLCDDFLNNPEEPKKDK*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.