Basic Information | |
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Taxon OID | 3300008219 Open in IMG/M |
Scaffold ID | Ga0114905_1063616 Open in IMG/M |
Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1332 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
Source Dataset Sampling Location | ||||||||
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Location Name | Mediterranean Sea | |||||||
Coordinates | Lat. (o) | 40.24 | Long. (o) | 2.3 | Alt. (m) | Depth (m) | 1876 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013820 | Metagenome / Metatranscriptome | 268 | Y |
F022754 | Metagenome / Metatranscriptome | 213 | Y |
F048916 | Metagenome | 147 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114905_10636161 | F048916 | AGG | MFLTGCSTAILSELAAPVANFGLGLYNADTYYSKECAWYEEVRLTQDTKQWLLQNNPPEIVSQDLAQVAKNNDIYKQ |
Ga0114905_10636163 | F022754 | N/A | VNELVIAIMLVIPSPYKIVHWTINQVPTQIQLIHKSGLEVSYNASPVSCSFRPRNSKEMIFKSSETDCYAVYDLSSPAFIRHRDFWFPVKHIRR* |
Ga0114905_10636164 | F013820 | AGGAG | MEKIIKPMMKAVDSFMPGYKTYFMMLLGIGMSVCQMMGYHQFDQEAWGILGIGGAATWKMGQDRKKK* |
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