Scaffold Ga0114904_1120634

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0114904_1120634

Scaffold Ga0114904_1120634

Overview

Basic Information
Taxon OID	3300008218 Open in IMG/M
Scaffold ID	Ga0114904_1120634 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	627
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	39.48	Long. (^o)	5.24	Alt. (m)		Depth (m)	2820
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024676	Metagenome	205	Y
F095588	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114904_11206341	F095588	N/A	VELELDFDKRPRKKDILHRLFDVMKEDKVEYKLYKYNNRLYDFVKRSIKNDKYK*
Ga0114904_11206342	F024676	N/A	MLGIDYMKNVMYNKNNMRKDMYVIAMPYPNQIQLPDILEEDNGKVIYFKNEVDAKKFLQNLYDERNINIQALIDDNIKIMRVQ*

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