Scaffold Ga0114904_1028512

Overview

Basic Information

• Taxon OID: 3300008218
• Scaffold ID: Ga0114904_1028512
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1571
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 5.24
  • Depth (m): 2820

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004336	Metagenome	443	Y
F006818	Metagenome	364	Y
F010572	Metagenome	302	N
F056142	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114904_10285121	F056142	N/A	TFDMSEAIVSCDELLHSVVENLTPSDIFRWETPVSVSKMVPVKNIENTVNAVLSQHSLESLVDEEGFPQKAYIEFHDDKLDFKPNFRRISIYTYHPKWIPMPDGAEPIGYEVAYQLSREFKRDMYEKMDSQKNAYVDVVRP*
Ga0114904_10285122	F004336	GAG	MKFIRNMLFSTGRYPSTMGAGGQQDVEFCRYIEWVWFKRCVWLLGIGFAFGGVGLYVGYYYDTVVTEYGMAVWGVAWLYNGFLMFVLAVSVILSAIKALVVKAFISPEVQVGQAATRTAQMMRKGGL*
Ga0114904_10285123	F006818	AGGAG	MAGPPQMTTLARKNPQHTQPEEQVREVAPAPNVLTRQPVQQQMMPSVETMSDDELEMYVARLKMRHKRLSRKWWGLRRKHGKDACPYCGMTTGGGFCKLHQRDYDEYLSALSTRQNRSFGL*
Ga0114904_10285124	F010572	GGAGG	MSGYAGSPSGYLNPVAVDKIQHPDYDAKAAENATMRIVQYLYPVIKNSVEMLEALCKETDVQVPTDLADNMEFLKTVYNTQIDWHPRT