Scaffold Ga0114899_1025230

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1025230
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2260
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F007267	Metagenome / Metatranscriptome	354	Y
F007647	Metagenome / Metatranscriptome	347	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10252302	F001594	GGAG	MEKTKLTKDEYLDSLDPDNLNLEKKDLINFCHKCVEEWKQNKVGNFKFIVAMELIIAGVKITPEDVLKAVWKKILVWFWDLQFKNALGDNEGMLKKLREVGSG*
Ga0114899_10252303	F007647	GAG	LDQAKVNHVVNAFFTSLRAEEDRMLETGLTHNNTVEVLRQAVIGLVESNPKRFQQYVKFFEEGCMYLQDESEELPEVDEIGR*
Ga0114899_10252305	F007267	GGA	MRLKIFTCPECKFRKFESINALNVHIGKSHTVDYKISIINNKPVFKKKTRASVQYIKK*