Scaffold Ga0114899_1023906

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1023906
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2337
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004908	Metagenome / Metatranscriptome	419	Y
F011291	Metagenome / Metatranscriptome	292	Y
F064626	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10239062	F011291	GGA	MDKYEINVWKDAELLSKEVIDFESNEECHAYVVEKYEAPGTWTGSHQNKAGVTLNRPPMGIRITWSKRGNTQYKPKKMSAEEKKLQRELYDSITPEVIAELGPNEMLAKVRKNYGPNPDAKGYNEFPGRKNEKNL*
Ga0114899_10239064	F004908	AGG	MERQEHQLTKRIVDLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSKLLELLSMGFRKTVENFKAGKAATNQGGEARFWVVVFQDYEVRLQTKTQIMEIVTEGHRHREDDDNAKFERNGHEEQYTLE*
Ga0114899_10239065	F064626	N/A	MKELRKVTEKIKKVLIKAERNGEEFPWIVDQLSLIKMYDVGLPITMVLGLIDEFVEDVEERKRIKALEGFDEEHVQKVYDRVNVKWNDRNIN*