Scaffold Ga0114899_1018873

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1018873
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2697
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000929	Metagenome / Metatranscriptome	830	Y
F017843	Metagenome / Metatranscriptome	238	N
F080156	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10188732	F080156	GAG	MNIDAKFFGIIIFLVSQTAAGIWWAASLSSEVERLAGIQGTSIPSIEKAIEGLDVMGFRVDQISKSWKR*
Ga0114899_10188734	F017843	N/A	LKIRRKMKKLLFALLALPMSLFAADFGRIGVDVSGSNDQGVHFGIADGGNLRLGLAGEGYTFTFNQDGNDMSVSAYGVELSRSDSKNVGVGYGAGIGILDGGVHYNWMSSGDHVVGGATTLTVGGFDLATSADWNLSASDITGKVGTSMDLFGAKASAVSKWDIDDLSYDGLELAAGYSIPVAAGIHLTPSVGVNFDRDWGRGDATASVSIRLSFGSNGIPSS*
Ga0114899_10188735	F000929	AGG	MSNGTPLNKSLSVGHILATVGLIIGGFAFIYDLRESVAIQSFQLENVEDRLERVVQRTDDQFGEIMDHLIRLEEKLDSMIIED*