NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114899_1017297

Scaffold Ga0114899_1017297


Overview

Basic Information
Taxon OID3300008217 Open in IMG/M
Scaffold IDGa0114899_1017297 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2849
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameMediterranean Sea
CoordinatesLat. (o)38.09Long. (o)11.46Alt. (m)Depth (m)1200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001594Metagenome / Metatranscriptome666Y
F007647Metagenome / Metatranscriptome347Y
F008755Metagenome / Metatranscriptome328Y
F091856Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0114899_10172971F007647AGGAGGLDQAKVNNVVNSFFNSLKTEEDKMLETGLTHNTTVELLHQATLQLVQENPKRFEQYVKFFEFGCMY
Ga0114899_10172972F001594GGAGMEKTKLTKDEYLDSLDPDNLNLEKEDLINFCHGCIDEWKKNKIGNFKYIVAMELMIGAVKITPEDVMKTVWKKILVWFWDLQYKNALAENEGMLRRLREIGSS*
Ga0114899_10172973F008755GGAGMNKSRVARDLWRKVFNDNLIDLKDSDARKQVVREFLNDPVNKKAGWKSKDARFFRLGFSKVAKENNFNVMNVGVTPTPSRSKTSKGSMNINVKSKQKNPSPLTTEPTSSSIKPPTEQEKKFGALPQTPQLENQQAQATYYSAQAVGQIFETVFNIVFTRLGAEGLTQNERIALGEAWTPIFNEYLTGENSKWIMPAIVTMPIILTRIVQVQKIKKEKELAERYGLDEVPKEPQPKKKSAWENMSHGENKTNKG*
Ga0114899_10172979F091856GGAGMKKDEVIIISCSSCGAMSHAIKNPKLPEGYRLKESEYVICKICFGDLK*
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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