Scaffold Ga0114899_1013265

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1013265
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3359
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008778	Metagenome / Metatranscriptome	328	Y
F051056	Metagenome / Metatranscriptome	144	Y
F068118	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10132652	F068118	AGGAG	MTQARCIQNVTFGASGETYESGKVYDVPAETLKRYGYYFEKMAVKPQNKAKATEENK*
Ga0114899_10132654	F051056	N/A	MTDPKPSTRFKLKGPIFNKPTQVSIGFQEAVNRGLLDLATIEGSNKVKEQLYPDHGRITGNLRNHVGANLIEDNVAQIDAGEYRYGANLIYSAWVEGISTRNSPEGFEGYQMFENAYDHINNNPKLYEDYIASAIVEAFD*
Ga0114899_10132655	F008778	GAGG	LSRSGALSRIDALLSEISDPAFTSVLRGEPLAISGSPLLAYWITGRTNDYETLGDIGSRTSILIRAYFRMQDSQDVRETLEEEVWDTIVQVDTKLSSDADLAGNVTDSSVGSATVGYISMGGGVFRAVSIPFEMQIYGEVTITP*