Scaffold Ga0114899_1012710

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1012710
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3443
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM23-C198 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006447	Metagenome / Metatranscriptome	373	Y
F007978	Metagenome / Metatranscriptome	341	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10127103	F006447	GGAGG	MSLLEKIAHIIGDRKVPIPAMPGLSVPRVSFANKHIVRIIFFTVLLSLAAVGTGMYFTIKDVVNATYNWPDPAIYDVTEEGLQTMGKKNPDMEDGSESQTLSIRLGDGVRISTLRIKDSDVGRTGIAKSLDISPLTTGVTGALAYLWVGNLTITNSSFPTLAWENSEVGTLNTGMLCDGHTMSATVSNTIPDLELSSERLASVYEVDSTIVDRIQVHITGNSGAYVENLIIDNLDAWNGAASFDRMKIGTATIDNSNRVGDGTGVDSASCVISPSVSSRVINNTMQDRPIKVR*
Ga0114899_10127107	F007978	GGAGG	MAITFNTDRLDGLAGTAINGVYGRIQSVTVKKYDTDPVSWKCLYDVVLHGSAAKRNADDEYPEWPNRLRSREIDHFTCTYDPTGANPFAQSYAALKVALAAGGSPIASSIADA*