Scaffold Ga0114899_1002269

Overview

Basic Information

• Taxon OID: 3300008217
• Scaffold ID: Ga0114899_1002269
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10416
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028039	Metagenome / Metatranscriptome	193	Y
F041493	Metagenome / Metatranscriptome	160	Y
F104992	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114899_10022697	F104992	N/A	MSGNADLTLTAASDKLQIVDPGGGARNLDLIFVDASETGVTTGFAEVYVQNEADADEALTIRDGNNSDNAIGVLDQNAGGWFRFVGGQWVSSTSGLN*
Ga0114899_10022698	F028039	AGGAG	MTTEIKTERWETIVKEIKFENRWNITLEKHLKDNNLTELPEPEWSDDPTMAYIYLPAKSLKGDTVRMDKTKARMFPESIVGYLEKGGLMKLPAKVEASQSSQIKEQLPKMETEKPKPQKIKLPKIGE*
Ga0114899_10022699	F041493	AGGAG	MTTQQQDYYTKMIDSNDDHLYTTIYDSVSGDPFRVKTERVGHYLSKIKKESRLEGKQLVFTGEWIPSFVKTKQEIIGSPISSEPKQIASVGQSKAGKRRRGRRGRKK*