Scaffold Ga0114898

Basic Information
Taxon OID	3300008216 Open in IMG/M
Scaffold ID	Ga0114898_1016852 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008216 Open in IMG/M

Scaffold ID

Ga0114898_1016852 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2621
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2621

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)	Depth (m)	3511
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.55

Long. (^o)

13.18

Alt. (m)

Depth (m)

3511

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F003270	Metagenome	496	Y
F008596	Metagenome	331	N
F025299	Metagenome / Metatranscriptome	202	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10168522	F025299	GGA	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKSKVRRSERKAKEANSMEDEMDKYLNNIPAITQHLEIELMNLKEKGATPEQCKSLESKLDLAKKAQQYEMPIRMLGKPILKKVLNIVDKFGV*
Ga0114898_10168523	F002100	AGGAG	LSQIPRDSFRPALIKPTFNVSDYGHDVIIPLNCLTGSATTTLTPSTATFVQVLEDSRVPVDEVNQFITDSDKMELIHAGNDTDFDTSWEWLPDMSFQAYKASFSVAVAMKVSAYTSGNFAISSVQLTMKVIGGGEGDEVIIDKIINPGMSNMTSATEQVAILNIDTKTSAKIPDKPVSIQVKVNTSSGTGTYQCGIVPLFCYFGSAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL*
Ga0114898_10168524	F008596	GGAG	MSGSWDIATATSLLTGVAKTQINGGANLTKPTQAVNLVEVVPYTVSSGAYTAGESIALTAYLDSFSVDLLPKRIIVPPVQAGLGTFINIVAPILEAYECNTALQQGATSQFIVSGQAQVANTVAPLMAMALHYSTTPPNRPEHFYHKPDNESTFTTATTNSGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSATTRFIMGVGYTKQG*
Ga0114898_10168525	F003270	N/A	LDDLGKLKVAAKILTGSLTGRVLFSEQYNPQASGQPRINPAGIINKWVGIGLAGKLYGKLGKSMKLPEASMIDRVGSKLIFGGAVGGFFDPPGNPGGYVSTANVTPNVIAQNRATTQRSFAQFQRNRSFVPLDSFDSSTGSAFR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114898_1016852

Overview

Ecosystem & Geography

Associated Families

Sequences