Scaffold Ga0114898_1016241

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1016241
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2680
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F072371	Metagenome / Metatranscriptome	121	N
F080137	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10162413	F080137	GGAGG	MNTKDKVYHEVLEHVVRLLSEKHPIEMIAGCLMVIGQRLYKTHLSPEEYKKIMKMAAEVEVVPYDIRKGTLH*
Ga0114898_10162418	F072371	N/A	MENKNQEKKQFYGKVDVIKDALTAATTLMDEMLAHKKVFRDYEKKWVELKDKPGYEGQLVLPLPLVLLMGLTVATKTVYNDSPGYTADTFSKFLTQAYPSIAPFIETLMFPVTLDSNIELDKIKEAYEGRTNKSQEEVENEAKLHGDVTVKDFLKKNNGSTH*