Scaffold Ga0114898_1011448

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1011448
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3382
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010920	Metagenome / Metatranscriptome	297	Y
F016410	Metagenome / Metatranscriptome	247	Y
F016673	Metagenome	245	Y
F067830	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_101144810	F016410	N/A	MRKFSSRKEQLEWADKLLRKLANSNTGGVTPIIKSMITENYIRRLKK*
Ga0114898_10114486	F016673	N/A	MESESNNEDIVIKSYLELYLRSLNDSKPQKFIDIIKKRMLILIKRKQDKINNS*
Ga0114898_10114487	F067830	GGAGG	MDKSKLTIVDTLDGKTLAYRNKTCVEIFPKTQEVGFTDYSYTYEEIIAIGKKLEELLEKSLVNVT*
Ga0114898_10114488	F010920	N/A	MEVYLMSEIKTYDVLISYPIKVGTESEEHVKEILMANELLRNAADLTLKITEVKDGQI*