Scaffold Ga0114898_1009462

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1009462
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3852
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019633	Metagenome	228	Y
F034540	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_10094622	F034540	AGGAGG	MATGDVTLSLAVEGGVTKTVVLDSATRALSRTKVAADNAPDEVVDTDVKWQVVVINRLANIVLAQANAQAQSEASWTARSFTAAT*
Ga0114898_10094626	F019633	AGGAGG	MNWLLKLLPADKRALLELAIRITASLDTAAERKAVADYGLEMLRDRKVSVGEWAKFGSKLGILKGPH*