Scaffold Ga0114898

Basic Information
Taxon OID	3300008216 Open in IMG/M
Scaffold ID	Ga0114898_1004179 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300008216 Open in IMG/M

Scaffold ID

Ga0114898_1004179 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6700
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (75.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

6700

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (75.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	38.55	Long. (^o)	13.18	Alt. (m)	Depth (m)	3511
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

38.55

Long. (^o)

13.18

Alt. (m)

Depth (m)

3511

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F008691	Metagenome / Metatranscriptome	329	Y
F025299	Metagenome / Metatranscriptome	202	N
F026289	Metagenome	198	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100417910	F002100	GAGG	MSFRPALIKPTYDIANFGHDNSLPLNCLSGSTVTLTPSSATFVQVLEDSRVPIDEVDMFITDSDKMAMVHAGNNTDYDETWTWEPDMSAQAYQISFNFAVGMKVSAYTSGNFKISNVQVVCKQIGGGEGDFVYLNKTIDPGMTNMAATGEQVAVINFSTSVSAKVFDKPLTFQIKVNTDSGTGTYQTGIIPLFCYLSVAVPKTWTTSSVLMHIHADLAHAFPIFRDEDNMNRIDTGIGL*
Ga0114898_100417911	F025299	AGG	MIVEEIPFFVEFVIIGIVLGFGYGFTKLFLNHAKDKNRIRRSERKAKEANSVEDELDKYLNNIPAITQHLEVELLNLKEKGATPEQCKSLESKLELARKAQQYEMPIRMLGKPLLKKALTIIDKFGV*
Ga0114898_100417912	F002150	GGAG	MVGVSVPAMIARKTAVKSGQVLQEQFGYNFIDLVTKLALFYMISFLISKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPQQWVSLFVDTDQKTYSATPTAPGQFNPPGWDKPYDYGTPEHQKAEPHLFPQKEQQFKFWDLINAIAIFYISWEAYKYWKRGGNDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK*
Ga0114898_10041796	F026289	GGTGG	MSLKQEKRSDRNEDEVFIDTLVKMLAEPHKDLIWNEKFKITVRKHFDI*
Ga0114898_10041797	F008691	N/A	MASLAGYNVKEEATEVKKNLFENRHTFVMLVVAGVVGGAITRFVIPKSITEGSVFSRFRSWFGYGQEEYEEEE*
Ga0114898_10041798	F003270	N/A	MAKKRRRRKSKNNKHKSIKSMIRQVVNKGAAPLAFWQQLSEKDYQVLNADGNYRALDYLGKLKVASNILTGSLTGRVLFSDQYNPQPSGQPRINPAGIINKWTGIGIAGKIYGALGRSMKLPEAASIDRIGSKLIFGGAIGGFFDPPSAQGRISTYAVTPNVMVQNRAQTDRSYGVARSNRSFVPLDSFDYSTGSAFRR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114898_1004179

Overview

Ecosystem & Geography

Associated Families

Sequences