Scaffold Ga0114898_1002294

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1002294
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10166
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007012	Metagenome	360	Y
F018077	Metagenome	237	Y
F033759	Metagenome / Metatranscriptome	176	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100229412	F033759	N/A	MIIKALILSTLLNSDFLAIVQISPVKIEARKRNGKGNKKRRRGGSGLR*
Ga0114898_10022946	F018077	GGAGG	MTVKRMASQLEQLFGRQSEQYLIQIINDGLMDIANKKQGYTVSALTDLEENKRWYELPDSVLGIERVEILDTNSRYIMIPKLSDPHKLLRADTDASNDDLT*
Ga0114898_10022948	F007012	N/A	MAILFICHKCNTKVECETKAEMVCGCGHYVKDHYDTRNYVNMGKTWSKTTKVEFNHTTMDKDIAERNSR*