Scaffold Ga0114898_1001301

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1001301
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15232
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002601	Metagenome / Metatranscriptome	544	Y
F015480	Metagenome	254	Y
F049685	Metagenome	146	Y
F059458	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100130112	F059458	GGAG	MIYLEDIKTEAEADAAVAECEIAAIEASEAISNKRNRIMRAERDIKCLQKLCVLRKWKGPQERLTAMLDRLGEAKTELQVNLWRS*
Ga0114898_100130122	F002601	N/A	MIKLIVLSVLLNAEEMHAMPPEDTKIEARRRGGKGDKKRRRGGNGLR*
Ga0114898_100130123	F049685	GAGG	MDYGKAKSVKDIMSEMLAEWLFKDFGILIDEPSEKEIAETLEEHKKEVLDDGVNKR*
Ga0114898_10013016	F015480	AGGAG	MNLPTLENMHISEHMENVYAQIIAEEDIGEDYGTKAIIQERVHTPRQRIF*