Scaffold Ga0114898_1001276

Overview

Basic Information

• Taxon OID: 3300008216
• Scaffold ID: Ga0114898_1001276
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15399
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.55
  • Long. (^o): 13.18
  • Depth (m): 3511

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F039340	Metagenome	164	Y
F105887	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114898_100127619	F039340	N/A	MFWLGNLKTTTAKFAPVAADFYARLKMFRPGYHFDNHKLLVDRLNIIMDKAAVEYDTDEDVVDDFTQYVKDWANRRSEARLDKSEGI*
Ga0114898_10012762	F001651	N/A	MGKQNGNKIIAEQRRSQVLQMKMAGATEQMIADQLGVSKAQVWNDVKRRLSEVRRDDVEAVEQEYNLQKSRYERLLLRWWNQAIGADDDQSARATSIVLDILRRLDTIGGLVPEKPLIQLQQQNILMGGMTFSDLVREALEDAGKTVEVEGRVYDSDEG*
Ga0114898_100127624	F105887	AGGAGG	MIKLTNIEGISRLSGTDEQGNAWIQFEVDYFAEQLEGECHICGEPLADGWMCLDGGDEVCSDHVEFI*