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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008216 Open in IMG/M |
| Scaffold ID | Ga0114898_1000599 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26173 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 22 (70.97%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mediterranean Sea | |||||||
| Coordinates | Lat. (o) | 38.55 | Long. (o) | 13.18 | Alt. (m) | Depth (m) | 3511 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010920 | Metagenome / Metatranscriptome | 297 | Y |
| F016410 | Metagenome / Metatranscriptome | 247 | Y |
| F016673 | Metagenome | 245 | Y |
| F062817 | Metagenome | 130 | Y |
| F067827 | Metagenome | 125 | Y |
| F067830 | Metagenome / Metatranscriptome | 125 | Y |
| F097498 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114898_100059910 | F097498 | GGAGG | VEFGNKYLGGDINKDYASIFIAPFGIEVFSYNEDIEINFTMWPVQLTFGIGKNRSLFRD* |
| Ga0114898_100059912 | F067827 | AGGA | MERDGDLGNYLRFNFENAIEIIDKLTKDNNALLDKIEELEAKLNKPITIKNQPISARFHQASKEADAAMKRFTAKLRKELNNAKSKQSQRQPV* |
| Ga0114898_100059919 | F062817 | AGGA | MFQDKMAEEADWKDGMNIFRSRVIEQLDGILEVLDILEREITKLKNKENTP* |
| Ga0114898_100059927 | F016673 | N/A | MISESNTEDIVIKSYVELYLKALNESRSYKFIKIIKSRMFELIKRKQIKNQTK* |
| Ga0114898_100059928 | F067830 | GGAG | MEKNKLEIVDEIDGKTLAYRTKPSVEIYTTTKEVGFSEFSYSWEEVIAIANKLEGFLEKDLVNVT* |
| Ga0114898_100059929 | F010920 | AGGAG | MNEIKTYDVLISYPIKVGAESEEHVKEILMANELLRNAADLTLKITEIKDGKK* |
| Ga0114898_100059930 | F016410 | N/A | MRKFSSKKEQLEWADKLLRKLSDKHTGGVTPIIKSMITENYIRRLKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |