Scaffold Ga0100217_12311

Overview

Basic Information

• Taxon OID: 3300008158
• Scaffold ID: Ga0100217_12311
• Source Dataset Name: Minidiscus trioculatus and Planctomycetes bacterium Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7402
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Source Dataset Sampling Location

• Location Name: USA: Monterey Bay
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.026
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057890	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0100217_123112	F057890	N/A	MVLSSEGLHLLSNVAIWRHDFETINDKNVTMWHHYYIDVINYYIMKENDCQRIISNNNKKEYSTSDGWDVFRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPVYMKKHTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK*