Scaffold Ga0114359_1051235

Overview

Basic Information

• Taxon OID: 3300008122
• Scaffold ID: Ga0114359_1051235
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1501
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007918	Metagenome / Metatranscriptome	342	Y
F014823	Metagenome / Metatranscriptome	259	N
F021930	Metagenome / Metatranscriptome	216	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114359_10512351	F007918	AGAAG	MCDTTLKESDPFLNLELDIEAGIKQELLSILANVETVTEAMNKAILKEEDRREQFRILCSSIDYLFGENIKVIEKRKDDLEKIDPSLHSIACKLSIRMERLRNVAIKPDLRSMKTGMRKVLSQQRIEKFQTNPQQEEQRPQKG*
Ga0114359_10512352	F014823	N/A	MSKKSNKSKDGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYKEIKRRKEFRSLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKETENLQSIAVAEEKVDLPESLEVL*
Ga0114359_10512353	F021930	N/A	MSDQDLRRVTDLLKEVEFEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVIKSKKDTVDGIVEIEKSGNRPSFLTIAEKLAVQLSVIEHIISCQSLEQMGELMKIVTSEDYEEAREKIDLRFTK*