Scaffold Ga0114359_1018611

Overview

Basic Information

• Taxon OID: 3300008122
• Scaffold ID: Ga0114359_1018611
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample HABS-E2014-0124-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2865
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4.8

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041008	Metagenome / Metatranscriptome	160	N
F055421	Metagenome / Metatranscriptome	138	N
F062460	Metagenome / Metatranscriptome	130	N
F069678	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114359_10186111	F069678	N/A	LNSFIKMSNQEQLAEGTSSTETLVDTVRTELIYKLKLCIDGINTEVDEVTYENIWSYEKMNRILANLRKLDPNWTIEGGFDKPGMWDLTDMLEGILKHRIIDIEIDDQDIENLDLESYNEFHKALIDMRKRDPGWSINGTRRNLDKPIKCRNIGLPTNSSESESENEHPNDRINAGTAHADR*
Ga0114359_10186112	F062460	N/A	MNLEKSIIEAVTTAVREIRQESCIEKQVKSLMKIYDAIVVKDNEISTESGLKTTRKRKRSISHE*
Ga0114359_10186115	F055421	N/A	MEEFTNPYKEINIETHLVWIAIVTIANYIPMEGIVGKCIRSYLALVVWLLIILNRKRSLWQRGAILIIYLKLNSMSRIIENLSYSVTVIKIGMLGVSLEQIICNNIIESVKMVILLHFMTVAICLPSGEEIESNLIKLTIGY*
Ga0114359_10186117	F041008	N/A	MPIKDEAEMARTLNKLIIVDIEEGYRVPVRRKRQEISDMLAENRYNDPEVWQALMDYDILLGELLQRYEEVENVMEHLFEYYLTSEYSQKLRIPLKGAKPVMNDRLHFQNKLEEVLEQRSSIENNKAVIALHSVTHTIERELRIVGDHNMVTLYKIDNELLNLKMMYEYLTENFNPHVVTKG*