Scaffold Ga0114355_1043593

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1043593
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2103
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001176	Metagenome / Metatranscriptome	756	Y
F001280	Metagenome / Metatranscriptome	732	Y
F076961	Metagenome / Metatranscriptome	117	Y
F105175	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10435931	F076961	N/A	MVEEYLIEKVRRDIIKEIGNLELPNEWKPQQVIDYIIRKIEKK*
Ga0114355_10435933	F105175	AGGAG	MADGKDLNGFTSPKVNDAPVWNGVQYASDPAAAFPATDKSTQDGAGLGQGGK*
Ga0114355_10435934	F001280	AGGTGG	MCVECGCEKVGSETGIVNIPGGILDTSRDGESGLTLNMTASNQERLRFINE*
Ga0114355_10435935	F001176	GAG	MSNGTGMTPPPNNTPAGAVTSQDTPKKNPSQGKFRSGVANQRVAVKIDTNKHGIRRETSVVPKRTGRPKKV*