Basic Information | |
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Taxon OID | 3300008120 Open in IMG/M |
Scaffold ID | Ga0114355_1033808 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2509 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000808 | Metagenome / Metatranscriptome | 882 | Y |
F026861 | Metagenome / Metatranscriptome | 196 | Y |
F049499 | Metagenome | 146 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114355_10338081 | F026861 | N/A | LMKLDEFKALVESQRKQTKLTNLEKIAKIVSTTNTKKGNN* |
Ga0114355_10338087 | F000808 | GAGG | MEYTYSLTTSYDGELVNTLRVSDMLEAVDAWNKCVDYGNAKDYATYNLSDPTGKMYTKTFYANGEVVIK* |
Ga0114355_10338088 | F049499 | AGG | MLTMDYRMVDVLNADQLEVSDLIGIADEIVKIISIAPLSDGFSLVIENEFGEKDLIEILDDEQFELFILE* |
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