Scaffold Ga0114355_1006557

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1006557
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6846
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000557	Metagenome / Metatranscriptome	1026	N
F020667	Metagenome	222	Y
F021095	Metagenome	220	N
F023322	Metagenome / Metatranscriptome	210	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10065571	F023322	N/A	TEMYRASQTEDAAYLYGHTKGSSDPSLINQLWCRSMVFFNIVAWERAIAELANADCVGAYWLTKEEFPQIADHNNPEGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF*
Ga0114355_10065574	F000557	N/A	MKLQDLTIDQFQRIAALEFSPVLTDYDKRAGVVAIVEGVDVSLVREMPAKGLTKRYKTIIAEWNELPTLAYRRRFKAGGKWWIPTVFTDELTAGQLIDLMDTDTTDEKKLVQNLHRIMATLCREGGLFGYFPKKYDGASHQERAELLKANAKIGDVWGVVSFFLLSSESYLKVLSDYSKHLTKGMQGQ*
Ga0114355_10065577	F021095	N/A	MSISVLSGSPLVATPVYNKMLYKVSGSLIAQPNFRYVCDVKNPAGTTLARLKCDKLPTTNFGFFDVQKVVETLVAPTAPSLTQTGFVDHSGFYSGYRLDFTQEYGNTPAVTGATTTVSGVMAFAGNLEQLELADWSLSPYFRIGSSFNSVRPLTTPTAFTVYQGGSNFLAINGTKYTTVSANDTWLVSARVNYKSVNYDFAVSPSLSGTTDFNIQRFACGPANLSGTISALSGAVEGDSYTVQFLGNAGLGSVQTTFTFGPCQRFDSIPVHFVNKYGGIDSYTFTMKNRKRANIQREVFGYNSDVYATTTYNKVWAGSFDFVYALNSDWLTDAESEWLIEMVRSGYVWLELGGQLVEAVVNANQYQFVTRRNDRLTQLQIEVAVAYDNNIL*
Ga0114355_10065578	F020667	N/A	MSVTLIAYPTTSFINDLAAWNNFNTRADADGADTKEDACFDCLYLRFAGLNAMPELAYVLDTMGGTDIAVTYSIGDIEDVTKQRGSFSKTITLPNTPTNRACFAYAYNIQSFVGGFQPNKRIRAAMWEDGVQVFSGVLQLLSMSKTKGTVTYEVGLFTDNVSLFKAIEGNMLVNTAGVTGMNHTPTSGHVSGTWTASGALSSGYVYGVVDAAGFTDILNQGGGWFQAPWWRLGPSIYVKKMVDLIFAEAGFRYSSTFFNSSLFNKLVMPYAAGTMPINLSGSNILAQSTGNTNIFLLTNYTLNFPKDTPAPFYDNPGYWVASSSTFVAPATDTRWNVDINFTLSGSFVSPGGQHRFVCSMSVRNLTAGTDNAVIGNFDVVNNQATKITFENITIPANTTANIGFRVEDIRSGVTQPYTLLSGATVQWTCLENPSNIGVLDMRTALPADVKQSDLLQDLQKMFNLQFMPDPQDPKLLYIEPWKDFYSSGSVVDWSQKSDENAEQNLTNGDPNAYTNIIFKYKDMGDYLSKTYKQSYPLAREGYGGRIFNTGNFYGKGDKVVETLCGTLIPASFSTDKIVGRTWDIDGTLASGTIKALQTGYRLAQYNLIEGQTEWAYQYGVSGNTALSVGILKMPFVSHIDNPYAPNVDLTFGQPRLVYYNAVNASGSPYAYTNNNLYNTYWLNYINETVSQEALQLELTMLLSSVDIYQLDFRKPVYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLTDFAATTTTPIASDPEFLFNGPIDPDPVDPGYEPPINPELPSEG*