Scaffold Ga0114355_1002472

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1002472
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12352
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (53.85%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001272	Metagenome / Metatranscriptome	733	Y
F020137	Metagenome / Metatranscriptome	225	N
F048263	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_10024721	F001272	N/A	RTAGCFGCSDGMITIELTTEQANQLLQLIDIAIKAGGFQNAKVGVPLAELIIAAAQPKPE
Ga0114355_100247211	F048263	AGAAGG	MAFENFLQNAANFATAGLYNNLSGRDKELEEQKLNEAAAFRANPELVREAAKYDPSIMERLGNLLTGGIYGQASGMNDKLEQRDMAKQQIIQDELQRRLEERMKAYGNPPVPEPVGSELNPDRSAMPMPVEPGTLRKKNTFAGGY*
Ga0114355_10024728	F020137	N/A	MNAHPSIIEASKLLRLHWPTCSTWNDDQLLNWIGIFNKMKQLGIIKNEKGECVGVGAVRFLNSIEEAQDINNNFPDGHIAWIEMVVGVEPEAVQTLWLAMMTVCSDKVTKVGGFSRGVSRLYDFDRYFKLLMNRRISYGW*