Scaffold Ga0114355_1000280

Overview

Basic Information

• Taxon OID: 3300008120
• Scaffold ID: Ga0114355_1000280
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41844
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (74.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001900	Metagenome / Metatranscriptome	620	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114355_100028011	F001900	GGA	MLVQAASGLERLMVGNRNNAMLKDSTVAQISAYMYYNAQVISKLTTNKAFQSKFSSVIFAQIDKDFGEYIDAIARSRPKSLHHVYEWKKVGNKTARLFDLKLLSQEGLSFKLGYQFKPSKSFVPASGQSRRRHVFVDKASIMEAGTPLVISPKYAERLVFEIDGETVFMPKGQSVKVRRPGGTAATNQFTLAHGRFFSSNLVGLSIRKSGFQRIFNAGMAKALSIPTNIKRIQFSFSPNAIRSQADAALAQSFGGVL*
Ga0114355_100028015	F005479	AGAAG	MPELLMTLEAMRKREHNEKKFQASLKGVDIGEYQEESKGNKFDDIRLRAAGIDATADDVVSLQGAFAAEAGFGIGAGLGYSKE*
Ga0114355_100028017	F005053	GGAGG	MAMYLPRGSALWIEAKDLLATPAGTTKIWNKVSEHNRSPIELSIDRIERSVRTSNGTLRKNHIADKRSFSMSWDMLPSYRTLTVDGGWGAEDLRQFYLSDDGKKTFNIRINLAKTGSDQSSSGYESYTVSFTSCNFTVVKRGLQPHWNVSLSMNEV*