Scaffold Ga0114354_1088320

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0114354_1088320

Scaffold Ga0114354_1088320

Overview

Basic Information
Taxon OID	3300008119 Open in IMG/M
Scaffold ID	Ga0114354_1088320 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Michigan
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1250
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location Name	Lake Erie, USA
Coordinates	Lat. (^o)	41.8271	Long. (^o)	-83.1945	Alt. (m)		Depth (m)	7.9
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033041	Metagenome / Metatranscriptome	178	Y
F044502	Metagenome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_10883202	F044502	N/A	MTKGFGFAGSLSYISDMMKEQDKFNGLSKGQVKQIIRRNMITRVKSSKKVYDRKKFKKDLES*
Ga0114354_10883203	F033041	N/A	MEKIKINPNFKFTFDNDVDLRRAELTGYIESYDMVRICVKRLDNGNQVDFPIKTREDYFETVASLNERANEFDMVEIYQDTHMFDMYDYI*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.