Scaffold Ga0114354_1057785

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1057785
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1638
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052465	Metagenome / Metatranscriptome	142	Y
F057944	Metagenome	135	N
F060707	Metagenome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_10577852	F060707	GGAG	MRKPIGLVVPIQIETLEEKEVFSAMEQSSVRKEAIRNPTKEAKLVAEVAILSELVRVLSDRVTELEAKYETSTN*
Ga0114354_10577853	F057944	AGGAG	MMQKEVDDNHPTVRMFSRTMQEAWPKDYVNEDIFTGPYREPQISDFAILCALIAIVWFFFYMFTRYIWS*
Ga0114354_10577856	F052465	N/A	EMLTEEREVGKRVAVLERLHQRYTTLRAARERIEILQEARRP*