Basic Information | |
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Taxon OID | 3300008119 Open in IMG/M |
Scaffold ID | Ga0114354_1008286 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 4872 |
Total Scaffold Genes | 13 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (84.62%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.8271 | Long. (o) | -83.1945 | Alt. (m) | Depth (m) | 7.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002977 | Metagenome / Metatranscriptome | 516 | Y |
F019762 | Metagenome / Metatranscriptome | 228 | Y |
F024559 | Metagenome / Metatranscriptome | 205 | Y |
F033308 | Metagenome | 177 | Y |
F067423 | Metagenome / Metatranscriptome | 125 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114354_10082861 | F067423 | N/A | VLQIPERDVKLEKKHPKLKKLYDEYIAALGKYRTFDAIKGDE* |
Ga0114354_100828610 | F033308 | GGA | MNTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGVVPFDLYASKGIATFTVWAESIQDAEHQVSQFLERDEDE* |
Ga0114354_10082862 | F019762 | AGGAG | MMKALHESIAHTAKETTIKENSGFRIRVEKHEVISPKGLFSLDIIQESLEDGKVQDSQTYNFFMTKEELDTLAQGLTA* |
Ga0114354_10082864 | F024559 | GGAGG | MTSALIKLILGIALIVIAVVFGPLLGIWSLNVLFPVLAIPYTWQTWLAYFLVFGSLTGLRFGSRK* |
Ga0114354_10082869 | F002977 | AGG | MIVQIPAEGIMQTNDWGDSRVYRISCNCGDENHNHNMWVEADDHDITVTIYTTGKTNYWSKTRWYHIWTLLTKGYIDTESTVCLTKQQALNYAETLKSAIEDVEMFRAERKEKSATVKLAEQGDCA* |
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