Scaffold Ga0114354_1008286

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1008286
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4872
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F019762	Metagenome / Metatranscriptome	228	Y
F024559	Metagenome / Metatranscriptome	205	Y
F033308	Metagenome	177	Y
F067423	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_10082861	F067423	N/A	VLQIPERDVKLEKKHPKLKKLYDEYIAALGKYRTFDAIKGDE*
Ga0114354_100828610	F033308	GGA	MNTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGVVPFDLYASKGIATFTVWAESIQDAEHQVSQFLERDEDE*
Ga0114354_10082862	F019762	AGGAG	MMKALHESIAHTAKETTIKENSGFRIRVEKHEVISPKGLFSLDIIQESLEDGKVQDSQTYNFFMTKEELDTLAQGLTA*
Ga0114354_10082864	F024559	GGAGG	MTSALIKLILGIALIVIAVVFGPLLGIWSLNVLFPVLAIPYTWQTWLAYFLVFGSLTGLRFGSRK*
Ga0114354_10082869	F002977	AGG	MIVQIPAEGIMQTNDWGDSRVYRISCNCGDENHNHNMWVEADDHDITVTIYTTGKTNYWSKTRWYHIWTLLTKGYIDTESTVCLTKQQALNYAETLKSAIEDVEMFRAERKEKSATVKLAEQGDCA*