Scaffold Ga0114354_1003865

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1003865
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7167
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Cryptophyceae → Cryptomonadales → Cryptomonadaceae → Cryptomonas → Cryptomonas curvata (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022823	Metagenome / Metatranscriptome	212	Y
F048775	Metagenome	147	Y
F059676	Metagenome / Metatranscriptome	133	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_10038651	F048775	N/A	NAKRMRFTLNNALNDLKLSQNARCVVETCNIPSITNLAGKYVLLRLVTSTQDKACDTKKFLNGNPILLSLATSSTVNSTNVLYNASEFFYNINVPTNIFSQGYIDMEVECPSATANIDFITNKPLSTFFINLIIVDEDPELTKDLTLAPPIDYNNYNINMPIKNY*
Ga0114354_10038653	F059676	N/A	MPSVKSIGYTNYATRPMEKTTSMNKQVSDHGNKAHYMKVGK*
Ga0114354_10038656	F022823	N/A	MQDVIHDIQVIEEDVKDVEKKCEKVNCIAIYDAIVATIKLIYDILFCCCKKKD*