Scaffold Ga0114354_1000315

Overview

Basic Information

• Taxon OID: 3300008119
• Scaffold ID: Ga0114354_1000315
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 84521
• Total Scaffold Genes: 144
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 100 (69.44%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.8271
  • Long. (^o): -83.1945
  • Depth (m): 7.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014494	Metagenome / Metatranscriptome	262	Y
F047646	Metagenome / Metatranscriptome	149	Y
F071976	Metagenome / Metatranscriptome	121	Y
F073096	Metagenome / Metatranscriptome	120	Y
F083937	Metagenome / Metatranscriptome	112	Y
F095137	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114354_1000315100	F095137	N/A	MPEKRQRKYPAKKCPTCSAVFSKQGKYCSRACGNSRTFTPTYKAKVSNSIKQKMIDDPEFREAAIAKILPDIPIPPQVEAPIGLNQFVSDGDLWTEID*
Ga0114354_1000315123	F071976	AGGAG	MKYRVIVNGVSFYTTGAAIKRGVGDSVSVNTVVRELFENLFNAVGISSTMTVYDHKMNRVSYDVQISKV*
Ga0114354_1000315129	F083937	GAG	MGKTYLKNQKSYDEQSSSRSGKHANHASGKKTGGMKTLNSYVEEDYEDPFQDDFGIEDSISIQHTKDDTTNTP*
Ga0114354_100031517	F073096	GGTGG	MKYILVAALFLSGCSVILPVKHDPALFNNLVEVKVAVDKLNCENKDWLDAQNKITHLRVYTELRKDPQANSVVQLGEAIEKAKQSNNKTFCESILRINKTRIDVIADAWRGR*
Ga0114354_100031518	F047646	GGAG	MILEELREVAGVGGPAAQLANELLVLADKKAIGELSQEEFEYLVREIADIRAQQDLANDEIACRWIVAAAQAIISVV*
Ga0114354_100031535	F014494	AGG	MTTKVFECESCGTSGKIVIKGTDTQYEDIVYCPICSADIYEEEDLDTED*