Scaffold Ga0114352_1026725

Overview

Basic Information

• Taxon OID: 3300008118
• Scaffold ID: Ga0114352_1026725
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-100-LTR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1201
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038078	Metagenome / Metatranscriptome	166	N
F043767	Metagenome / Metatranscriptome	155	N
F045533	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114352_10267251	F043767	GAG	MENQEQGQSNGHSLFFSRHPSEANAYRRKRLWREKALETLDLLNYIKLEEMATSEHNIQVYEAIRERLKMLKMIDPERKIHQDTLVETTVIKYDCPMCLPTDDSNYEIE
Ga0114352_10267252	F038078	N/A	MAAKEERKCTAEMKKSKRESIERFFSLINFIFFMSEEEDITLLKYLHEAKAKVLAYSEYWSLVDYIGMTIGGIFRCIDTIDVEEKWDSKNNKEWFHEMIKSMNTLKDLHPQWHLTKQDVDRYSTTCPCSQCSIEEGREDTISSSISKLSI*
Ga0114352_10267253	F045533	N/A	SSDQRPVNEKEELVYRLLCLINLAFSQVGKRNEDYLVLQQIHETKLKITRIDPSWSFYDSDDYLINKILRYINAINSNKEWNHEDNMKLFTEVRRNMVVLKEHNAYWFIDKNSIESHNPFLCHGCRKLKEEKRN*