NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114351_1030452

Scaffold Ga0114351_1030452


Overview

Basic Information
Taxon OID3300008117 Open in IMG/M
Scaffold IDGa0114351_1030452 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5571
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7026Long. (o)-83.2538Alt. (m)Depth (m)5.9
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014847Metagenome / Metatranscriptome259Y
F015581Metagenome / Metatranscriptome253Y
F028095Metagenome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0114351_10304521F028095GAGMKLQDKVNRPTLSKEKINRDNKAFKRIVDQYQKWCANGGGYEETRETYEDDIIKCLFEFDHDGYYLATFLNENVYIEPDSELVDILDDVQFVVRSLTEEIIGQWTKENFLEIPSNVIGKKVNAKQGYKKYENH
Ga0114351_103045210F015581N/AMSELTKPNAFVFKAFIDGEYRLCVCPRINDKWSEADLVYVKDDPYKEFDEVLDNKFFSVIFVGYEQDPNGSGGFTLKNVNSNYLKSDVNVASEMYAEGSFFATIEKGYQHFYEQSERQGIKTETNK*
Ga0114351_10304523F014847AGGMEFESNDDILRDLMDNIRTLHEENARLMQEVEQLKEENKELNRKLKSIQALFL*

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