Scaffold Ga0114351_1030452

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1030452
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5571
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (26.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014847	Metagenome / Metatranscriptome	259	Y
F015581	Metagenome / Metatranscriptome	253	Y
F028095	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_10304521	F028095	GAG	MKLQDKVNRPTLSKEKINRDNKAFKRIVDQYQKWCANGGGYEETRETYEDDIIKCLFEFDHDGYYLATFLNENVYIEPDSELVDILDDVQFVVRSLTEEIIGQWTKENFLEIPSNVIGKKVNAKQGYKKYENH
Ga0114351_103045210	F015581	N/A	MSELTKPNAFVFKAFIDGEYRLCVCPRINDKWSEADLVYVKDDPYKEFDEVLDNKFFSVIFVGYEQDPNGSGGFTLKNVNSNYLKSDVNVASEMYAEGSFFATIEKGYQHFYEQSERQGIKTETNK*
Ga0114351_10304523	F014847	AGG	MEFESNDDILRDLMDNIRTLHEENARLMQEVEQLKEENKELNRKLKSIQALFL*