Scaffold Ga0114351_1026165

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1026165
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4492
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Caudoviricetes sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042880	Metagenome	157	Y
F064681	Metagenome	128	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_10261655	F064681	GAGG	VEHTLEECPNISTEYQDTCQECGELSSCVCLSSIVQEWEIEKVGEGAFAYRYQFRQYKSDLVGQFGYAESYREAMDNIAHAVRCKEARA*
Ga0114351_10261656	F079999	AGGAGG	VSDIFELSFRWQDGAVQVIIYALVIYLGLVIISKISDKREGKR*
Ga0114351_10261659	F042880	GAG	MMSNYTTIGELIEHLKGEDLEAPIIYQYYLAEHFEISEEVFAEVARDFDSLIPCSDSYEVISKEINSKREEVNA*