Scaffold Ga0114351_1021414

Overview

Basic Information

• Taxon OID: 3300008117
• Scaffold ID: Ga0114351_1021414
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6523
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7026
  • Long. (^o): -83.2538
  • Depth (m): 5.9

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010673	Metagenome	300	Y
F074789	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114351_102141415	F010673	N/A	MNSKLIPILQRIIARDSVLRAFDPDNLPQSALAYVRRHYLNDNFLWLTPEEQDLLEDLPPFADNLSESIRPGGGIGNPDSTVYHIFDDGSLWLKTNAYSSVWADARDFAVEIILPRMELTRMDADFLRAIGSEGVVESVRDDFFHAFAETLHRRCGIPHSDARGHWDAYARQLGEPERDALELGGRESGVREGHLFAETFKSETINA*
Ga0114351_102141417	F074789	N/A	MQSTIETFRALESDDQVRLRALPEVESYFDVYGEPDDAHERQEIIDQIDRNGCWFVVSEFYADGQWHHADSVGMCAGYENPLDPAENCYVEGLMESAIRALEMQSTEGALI*