Basic Information | |
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Taxon OID | 3300008117 Open in IMG/M |
Scaffold ID | Ga0114351_1013275 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-C-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 16883 |
Total Scaffold Genes | 30 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (33.33%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7026 | Long. (o) | -83.2538 | Alt. (m) | Depth (m) | 5.9 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012771 | Metagenome / Metatranscriptome | 277 | Y |
F017470 | Metagenome | 240 | Y |
F027440 | Metagenome / Metatranscriptome | 194 | N |
F037195 | Metagenome | 168 | N |
F043895 | Metagenome | 155 | Y |
F044452 | Metagenome | 154 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114351_101327510 | F027440 | GAG | LLKITWHFKSFIRFAGPVGPERTVSFQAPILSVTDLAYYIRRGEALAEIPTEHVTKVKNEDGSVTETKRISNALSDLVQAELLDIAEDASEAYLSKGNTPDYFAAFIYGVSADRETEKSVLKKIDGIKSEIGSLVFALAGEWTEDTARSLGVSDKDAAIAKQSNLIGSLAQLLAKANELSSAKAKREAKKKSV* |
Ga0114351_101327516 | F012771 | N/A | MNSKIKRPTSKVFVVSDDTHKKLKAYAMKMGYKLQYIADEAVAEYLARKESK* |
Ga0114351_101327519 | F037195 | N/A | MNIFNPTNPPQHNPTELLKQAENLLNKTERKQGWPYYDIKHALQFAQMVIKLSKIPSKKATINTLTLRQQPQTVRARLSQGKAFIVDKGIDVLKGQIDPDDMPLVDELAEKVQISVRKVNLIIELVEPVDNILDAMTPLLGGTDEDPFVFNEDIFREQLLEFINTGEIGSQASWQNYTSSAEKYARQLALQDNTLIIETTPNELIIMKMSEEMLKGLE* |
Ga0114351_10132752 | F017470 | GAG | MMRNQILGLRRAGMSVEEVSAALEIDPMVVKLALEATGGSVALRKEALKENPDDITDDVSEQEAKEMMGIIKNIARDEDSGVYARLNAAKYAHGAKRGYHKRHLDLNVGSGELLLKINEAYASASMRARAALGGQSLTAKEITIEAPITVEASVESQPTDHTTQSEPAAPKPRPFKL* |
Ga0114351_101327523 | F043895 | GAG | MKILMIGLSILATETTLVALQQDFDAKLRAISQIESNDNDKAKGRHGELSRYQLKRAVWKQHFPSEKDQRHIPSAARRCAKAHLCWLELRLCVAQRVNNPQPRDVYAAWNIGLEAFSRRDYNFDRLPDSIKQRADRFTNLYTEFRNSQ* |
Ga0114351_10132757 | F044452 | AGAAG | MTNRCLRCLQVIDADRKALGFDRCIKCAPQWQYKGALNFGHKTGGAIQPMHPDAFKVHKRVTARKAKGTNGAAFQQGTCVITIKDA* |
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