Scaffold Ga0114350_1097890

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1097890
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1732
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021965	Metagenome / Metatranscriptome	216	N
F084219	Metagenome	112	N
F102699	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10978901	F102699	GGA	MHEPSFYLSLDLPKNFTREDAEKIRKDVLDFLEGKRHYGAKYDGKNGITVKVIS
Ga0114350_10978904	F021965	N/A	MNRILDEMIFAFDYTINPDKYVPFPEESMKWDLKDKNYFNREKTIEEKVAWDDYIKKCEQHDTRKKQGLQLFVDHIDILWL*
Ga0114350_10978905	F084219	N/A	MSYQMEFDFETPEQKEKRFKALQKQDLEFDKLFGADGDYYTYNKYIDNLIDFLPYRLGWGFKHNWSDLRWWIKCKYQKLRYGVSDDDVFSLETNIAKYIAPRLQYFKKKGKYGIPMKFLPSNYSYHESDFR*