Scaffold Ga0114350_1040946

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1040946
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2859
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015434	Metagenome / Metatranscriptome	254	Y
F029439	Metagenome / Metatranscriptome	188	Y
F074801	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_104094610	F029439	N/A	VKMTTLNTITLEPNHVMASSNTGSPMVFRNTVGNYISRKAYLEMLATKQGVVSHRYLSPNESRWVISNMKESI*
Ga0114350_10409463	F015434	GGA	MESKYPDPWHRHTPKGMSIATTTTKSKKCCDTCECEQTKEEQFNKLMETRVSFEE*
Ga0114350_10409464	F074801	N/A	MSFLENLEESLFPEEAGNGEIIQDELPIELEERLSIEQIEKYNERLKYMEENGI*