Scaffold Ga0114350_1037196

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1037196
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1873
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001477	Metagenome / Metatranscriptome	687	Y
F005558	Metagenome	396	Y
F031792	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10371962	F001477	AGAAGG	MMSNVYTIHPPKSDLILFYEVVEPDGSNTWGGADAEQCMQWLTLAPTGSRVLVSAWDSDEEDAHLVGQTIDITEIIQRAREVGR*
Ga0114350_10371964	F000821	AGGGGG	MNKEYLEAKFDLCINQADKNIKEEEIAEAIKNLKRANSALSQLFGFEEEENE*
Ga0114350_10371966	F031792	AGGA	MGYEPELNDPVFYAGEYEEAVKCFICGDQLDPDDIVWANMEGQIVKEGNDTTWCVVCLPSEGESNE*
Ga0114350_10371967	F005558	GGAGG	MDSVMSWGELAELTHATQVEKFNFCMCEDNKGRENPYEDCPKDGM*