Scaffold Ga0114350_1016264

Overview

Basic Information

• Taxon OID: 3300008116
• Scaffold ID: Ga0114350_1016264
• Source Dataset Name: Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Michigan
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3175
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location

• Location Name: Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.7635
  • Long. (^o): -83.3309
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019061	Metagenome / Metatranscriptome	232	Y
F029435	Metagenome / Metatranscriptome	188	Y
F039496	Metagenome	163	Y
F076003	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114350_10162641	F039496	N/A	TMTDISKLSFKQLQALEKQIEERKETLRKSKECFEGYKVTFCVKFNPATNPYSDLRSPEDFGDYLANDIANVLVNDFGLRQSDVSGFAVFEMDEDDKDDWKGFWEGEE*
Ga0114350_101626411	F019061	GGA	MEPTDTEILEFLLNQFKPHSLKMNGESDWVFINSGFPMNRAKGKSARDAVINAMEAK*
Ga0114350_10162646	F076003	GGAG	MKLTAHEFAVIIDTINHSLMVSNWKGYYTHQSRENVRNAIADIMGQMSVEIITDKANFTIDADAGI*
Ga0114350_10162648	F029435	GGAGG	MTKQELKELLTPEFLSTLHSAVECCNWDTDMVVTMQFCDWCYRVAGQPEPEYNMSFELENQK*