Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1014832 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3358 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403 | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005092 | Metagenome / Metatranscriptome | 412 | Y |
F049499 | Metagenome | 146 | Y |
F058095 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114350_10148322 | F005092 | AGGA | MDKLEYALRTIANCDLCYGKGYHGFANGEDYDIEDCECNTYGIILDEDGSVIYDNGLLSEPELFSSMEAR* |
Ga0114350_10148324 | F058095 | GAGG | MEYNYVLTTSYDGELFSTHRISDFMEAHEAWAKCVDYGNAKEYATYNLTDLTGKMYTKTFYSNGEVVIK* |
Ga0114350_10148325 | F049499 | AGG | MLTMDYRMVDVLNADQLEVDDLIGIADEIVKIISISPLSDGFSLVIENEFGEKDLINILDADQFELFILE* |
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