NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1011379

Scaffold Ga0114350_1011379


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1011379 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3960
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (66.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F003582Metagenome / Metatranscriptome478Y
F028150Metagenome / Metatranscriptome192Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_101137910F000473N/AMDSSHFKHGINLWTGEPNKPVFYNSEMAKAVRSITKPSNKLMMDIVKYPEFLALRLYEDNFIQFEGLKKEMVIDYVGKVKKLIESYGVRCELEGVPSEKVL*
Ga0114350_101137912F000671GAGGMEKLLCYSCNKSKNKLNMKRSTLFPINLLMCETCITSKYEPRWVIILSGRQNGSESVREFILKKRYE
Ga0114350_10113792F028150AGGGGGMNWLKKRVIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKEE*
Ga0114350_10113796F003582N/AMNTYRVKLEVDAEVQAFNEDDAIDYVNDIFGVDEEIKNIKIVSVKEK*

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