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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300008116 Open in IMG/M |
| Scaffold ID | Ga0114350_1009660 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Michigan |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11046 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Erie, USA | |||||||
| Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F017468 | Metagenome / Metatranscriptome | 240 | Y |
| F068608 | Metagenome / Metatranscriptome | 124 | Y |
| F073287 | Metagenome / Metatranscriptome | 120 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114350_100966012 | F068608 | N/A | DPMTVSPNGGNGQSGRFVAQKVAKATQLRPSGFAQGENTAMAQQISEGGNVSTTANAANPASQLPKPGAGEGMAQLLGAISPLDAEPDTYLPATDGVDFGSGRGSEALPPSINPNNRQIENVDLVKRYLPDLLNAARMPGAPDSYKRMVNALMRELM* |
| Ga0114350_10096603 | F017468 | N/A | MKHWEYHPEPVEGCFGCKGLSIQMNAGDADSRKFMTNKRHNTELNAYKEAVRQGIQPAGTTMDKIQAAVNASEVLGKPYNAENMPPAKHINKKTAAVMKELGA* |
| Ga0114350_10096608 | F073287 | AGG | LPPPPTTINFSAKGSKKTINYIWMPDANGNLVKKDAAIVKKTFSKLSEKAQTALAQYIITVQNRQPTDAARKTVFNNIIDAAVASYKEGKKQTPWDVLQIQLDNAPRQTNATYSYTNYDKITSDAILQNAARELGFTEGSFAQFGEQDLADFYEKLSAAAKAGGKTTQVITKPDGTQETVTTPGLFDAKTFAQNYLWTKVNVGDAKTLPTSVIDKIGTLKTLLKANGLGYFGDKEIANYALQLTKGEMSLDKLQAEFNAKAAEIYPLFADRLKANPSLTVMDLAQPYIGRMAKYWEIDPSTIDLDNPDLDKFLRPDGTAGKVPMGSLADFETYLKFHPNSEKAQWKIQGSRDLATGLASAMGFGV* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |