Basic Information | |
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Taxon OID | 3300008116 Open in IMG/M |
Scaffold ID | Ga0114350_1007630 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Michigan |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 8237 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (90.48%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Associated Families | 9 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, USA | |||||||
Coordinates | Lat. (o) | 41.7635 | Long. (o) | -83.3309 | Alt. (m) | Depth (m) | 4 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F000311 | Metagenome / Metatranscriptome | 1326 | Y |
F001043 | Metagenome / Metatranscriptome | 794 | Y |
F006984 | Metagenome / Metatranscriptome | 360 | Y |
F017134 | Metagenome / Metatranscriptome | 242 | Y |
F036238 | Metagenome | 170 | Y |
F048982 | Metagenome / Metatranscriptome | 147 | Y |
F074872 | Metagenome / Metatranscriptome | 119 | Y |
F076101 | Metagenome / Metatranscriptome | 118 | Y |
F085262 | Metagenome / Metatranscriptome | 111 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114350_10076301 | F048982 | GGAG | MISIELQDVLKSCRQIRGNDYNSGTHYLLGYLWANTSNKEKMRIAKLFAKDLEEIQKE* |
Ga0114350_100763011 | F074872 | AGGGGG | MSVPPDTISTYKKGSKMTVDNKTYKVGDLFTTLKSHKTGVIKEIIPNASGSVRVLLEMPNKETRWTTVVVGA* |
Ga0114350_100763017 | F000311 | GAGG | MYFELTAPDRLSMEMAYWEAQVMGLDPEAMSPLTFNIGTGSIEKVSNLRDKFNLKETYTSEYEPTGY* |
Ga0114350_100763018 | F001043 | AGGAG | MSDYRDGFDDGYKFAREEIIEKLQEIDLADIDSWLLSKLADMIEGGDL* |
Ga0114350_100763020 | F036238 | GGCGG | MGDRANFGFKQSNGETIVLYGHWAGHDMLSNLASAVEAARPRWNDESYATRICVSQLIGNQWSDETGWGLSVNRILDNEHKIAIIDWSAGTFSLHEEAPWSESDLNKVRGMQDEPIFTLPLDAFVNKYSRSLV* |
Ga0114350_100763021 | F006984 | AGGA | MPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSMGFPTKIKEVTYSNPVFAFFNIHSYKDEGITDE |
Ga0114350_10076303 | F076101 | AGG | MYKITLSYDNNAPHWQGDYYDEMKAWEAFFQFIDWGFADEFATVNIYTPELKCYTKVFYREGRKVVTK* |
Ga0114350_10076306 | F085262 | AGGAGG | MDNLYSILSEWYPEGEFSESELWDAIAESEGVEVSEIMDGDLIEYL* |
Ga0114350_10076309 | F017134 | AGG | MSLFTVACLNYEICGDESTFDSVEQYEIYGDDYICAECYADEEMTFFEIAGWADSDALASAGHGSDEDY* |
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