NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114350_1007630

Scaffold Ga0114350_1007630


Overview

Basic Information
Taxon OID3300008116 Open in IMG/M
Scaffold IDGa0114350_1007630 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-3-NA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Michigan
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8237
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (90.48%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Associated Families9

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton → Harmful Algal Blooms In Lake Erie

Source Dataset Sampling Location
Location NameLake Erie, USA
CoordinatesLat. (o)41.7635Long. (o)-83.3309Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F001043Metagenome / Metatranscriptome794Y
F006984Metagenome / Metatranscriptome360Y
F017134Metagenome / Metatranscriptome242Y
F036238Metagenome170Y
F048982Metagenome / Metatranscriptome147Y
F074872Metagenome / Metatranscriptome119Y
F076101Metagenome / Metatranscriptome118Y
F085262Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0114350_10076301F048982GGAGMISIELQDVLKSCRQIRGNDYNSGTHYLLGYLWANTSNKEKMRIAKLFAKDLEEIQKE*
Ga0114350_100763011F074872AGGGGGMSVPPDTISTYKKGSKMTVDNKTYKVGDLFTTLKSHKTGVIKEIIPNASGSVRVLLEMPNKETRWTTVVVGA*
Ga0114350_100763017F000311GAGGMYFELTAPDRLSMEMAYWEAQVMGLDPEAMSPLTFNIGTGSIEKVSNLRDKFNLKETYTSEYEPTGY*
Ga0114350_100763018F001043AGGAGMSDYRDGFDDGYKFAREEIIEKLQEIDLADIDSWLLSKLADMIEGGDL*
Ga0114350_100763020F036238GGCGGMGDRANFGFKQSNGETIVLYGHWAGHDMLSNLASAVEAARPRWNDESYATRICVSQLIGNQWSDETGWGLSVNRILDNEHKIAIIDWSAGTFSLHEEAPWSESDLNKVRGMQDEPIFTLPLDAFVNKYSRSLV*
Ga0114350_100763021F006984AGGAMPNWVYNTLTIQGPKSEVDMIKDRLNKPFTLAQETFGMGDISSMGFPTKIKEVTYSNPVFAFFNIHSYKDEGITDE
Ga0114350_10076303F076101AGGMYKITLSYDNNAPHWQGDYYDEMKAWEAFFQFIDWGFADEFATVNIYTPELKCYTKVFYREGRKVVTK*
Ga0114350_10076306F085262AGGAGGMDNLYSILSEWYPEGEFSESELWDAIAESEGVEVSEIMDGDLIEYL*
Ga0114350_10076309F017134AGGMSLFTVACLNYEICGDESTFDSVEQYEIYGDDYICAECYADEEMTFFEIAGWADSDALASAGHGSDEDY*

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